Calculate Splicing Quantitative Trait Loci

GTEx Portal API documentation.

Usage

calculate_splicing_quantitative_trait_loci(
  tissueSiteDetailId,
  phenotypeId,
  variantId,
  datasetId = "gtex_v8"
)

Arguments

tissueSiteDetailId

String. The ID of the tissue of interest. Can be a GTEx specific ID (e.g. "Whole_Blood"; use get_tissue_site_detail() to see valid values) or an Ontology ID.

phenotypeId

String. See GTEx portal FAQs for further details.

variantId

String. A gtex variant ID.

datasetId

String. Unique identifier of a dataset. Usually includes a data source and data release. Options: "gtex_v8", "gtex_snrnaseq_pilot".

Value

A tibble.

See also

Other Dynamic Association Endpoints: calculate_expression_quantitative_trait_loci(), calculate_ieqtls(), calculate_isqtls()

Examples

# \dontrun{
# perform request - returns a tibble with a single row
calculate_splicing_quantitative_trait_loci(
  tissueSiteDetailId = "Whole_Blood",
  phenotypeId = "chr1:15947:16607:clu_40980:ENSG00000227232.5",
  variantId = "chr1_14677_G_A_b38")
#> # A tibble: 1 × 14
#>   data     error genotypes hetCount homoAltCount homoRefCount    maf   nes
#>   <list>   <dbl> <list>       <int>        <int>        <int>  <dbl> <dbl>
#> 1 <tibble> 0.139 <tibble>        69            0          601 0.0515 0.757
#> # ℹ 6 more variables: pValue <dbl>, pValueThreshold <dbl>, phenotypeId <chr>,
#> #   tStatistic <dbl>, tissueSiteDetailId <chr>, variantId <chr>
# }